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1

Coarse-Graining Methods for Computational Biology

Saunders, Marissa G., Voth, Gregory A.

Journal:

Annual Review of Biophysics

Year:

2013

Language:

english

File:

PDF, 704 KB

english, 2013

2

Finding solutions to challenges faced in community-based participatory research between academic and community organizations

Shoultz, Jan, Oneha, Mary Frances, Magnussen, Lois, Hla, Mya Moe, Brees-Saunders, Zavi, Cruz, Marissa Dela, Douglas, Margaret

Journal:

Journal of Interprofessional Care

Year:

2006

Language:

english

File:

PDF, 139 KB

english, 2006

3

Coarse-graining of multiprotein assemblies

Marissa G Saunders, Gregory A Voth

Journal:

Current Opinion in Structural Biology

Year:

2012

Language:

english

File:

PDF, 1.17 MB

english, 2012

4

Comparison between Actin Filament Models: Coarse-Graining Reveals Essential Differences

Marissa G. Saunders, Gregory A. Voth

Journal:

Year:

2012

Language:

english

File:

PDF, 1.93 MB

english, 2012

5

Water Molecules in the Nucleotide Binding Cleft of Actin: Effects on Subunit Conformation and Implications for ATP Hydrolysis

Marissa G. Saunders, Gregory A. Voth

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.73 MB

english, 2011

6

Coarse-Graining Provides Insights on the Essential Nature of Heterogeneity in Actin Filaments

Fan, Jun, Saunders, Marissa G., Voth, Gregory A.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 647 KB

english, 2012

7

Optimal Number of Coarse-Grained Sites in Different Components of Large Biomolecular Complexes

Sinitskiy, Anton V., Saunders, Marissa G., Voth, Gregory A.

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 942 KB

english, 2012

8

Molecular Origins of Cofilin-Linked Changes in Actin Filament Mechanics

Fan, Jun, Saunders, Marissa, Haddadian, Esmael, Freed, Karl, De La Cruz, Enrique, Voth, Gregory

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 63 KB

english, 2013

9

Coarse-Grained Analysis and Modeling of Nucleotide-Dependent Changes in F-Actin

Saunders, Marissa G., Voth, Gregory A.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 66 KB

english, 2012

10

Models of Heterogenous Actin Filaments

Fan, Jun, Feng, Shulu, Saunders, Marissa, Lu, Lanyuan, Voth, Gregory

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 37 KB

english, 2012

11

Exploring Protein Conformational Change Using The Double Well Network Model

Saunders, Marissa G., Voth, Gregory A.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 39 KB

english, 2009

12

Molecular Origins of Cofilin-Linked Changes in Actin Filament Mechanics

Fan, Jun, Saunders, Marissa G., Haddadian, Esmael J., Freed, Karl F., De La Cruz, Enrique M., Voth, Gregory A.

Journal:

Journal of Molecular Biology

Year:

2013

Language:

english

File:

PDF, 2.14 MB

english, 2013

13

Nucleotide Regulation of the Structure and Dynamics of G-Actin

Saunders, Marissa G., Tempkin, Jeremy, Weare, Jonathan, Dinner, Aaron R., Roux, Benoît, Voth, Gregory A.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 2.12 MB

english, 2014

14

Origins of Enhanced Proton Transport in the Y7F Mutant of Human Carbonic Anhydrase II

Maupin, C. Mark, Saunders, Marissa G., Thorpe, Ian F., McKenna, Robert, Silverman, David N., Voth, Gregory A.

Journal:

Journal of the American Chemical Society

Year:

2008

Language:

english

File:

PDF, 2.34 MB

english, 2008

15

Unraveling the Mystery of ATP Hydrolysis in Actin Filaments

McCullagh, Martin, Saunders, Marissa G., Voth, Gregory A.

Journal:

Journal of the American Chemical Society

Year:

2014

Language:

english

File:

PDF, 4.10 MB

english, 2014

16

Using multiscale preconditioning to accelerate the convergence of iterative molecular calculations

Tempkin, Jeremy O. B., Qi, Bo, Saunders, Marissa G., Roux, Benoit, Dinner, Aaron R., Weare, Jonathan

Journal:

The Journal of Chemical Physics

Year:

2014

Language:

english

File:

PDF, 2.30 MB

english, 2014

17

Unraveling the Mystery of ATP Hydrolysis in Actin Filaments

McCullagh, Martin, Saunders, Marissa G., Voth, Gregory A.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 39 KB

english, 2015

18

Minimizing memory as an objective for coarse-graining

Guttenberg, Nicholas, Dama, James F., Saunders, Marissa G., Voth, Gregory A., Weare, Jonathan, Dinner, Aaron R.

Journal:

The Journal of Chemical Physics

Year:

2013

Language:

english

File:

PDF, 2.03 MB

english, 2013

19

Structure and Function of Membrane-Remodeling ESCRT-III Assemblies

McCullough, John, Saunders, Marissa, Colf, Leremy, Sundquist, Wes, Frost, Adam

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 40 KB

english, 2015

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